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Scientific ML

AlphaFold2-mini

A focused implementation study of the representations and geometric reasoning behind structure prediction.

StatusOpen source
Focusattention · protein folding · transformers

Why this exists

An implementation of the AlphaFold2 protein-folding transformer: tracing the architecture from attention and pair representations through geometric structure prediction.

Working notes

This page is intentionally a concise record rather than a polished case study. As the work matures, it can hold architecture diagrams, experiments, implementation notes, and links to associated writing.

View repository on GitHub