Selected work

Projects

Work organized by the capabilities it develops: scientific modeling, modern ML engineering, and systems fundamentals.

Scientific ML

Protein AI

ProtDiffusion

A PyTorch implementation exploring diffusion-based protein structure prediction.

PyTorchdiffusionprotein structure

Scientific ML

A focused implementation study of the representations and geometric reasoning behind structure prediction.

attentionprotein foldingtransformers

Biological foundation models

An implementation study of scGPT for single-cell transcriptomics.

transformerssingle-cellomics

Computational biology

A machine-learning project for prognosis prediction from transcriptomic and clinical data.

RNA-seqclinical dataML

AI Engineering

Agentic AI

A biology-focused tool-calling agent fine-tuned with SFT/LoRA on open-source language models.

tool callingSFT / LoRALLMs

AI Engineering

Implementation-led study of the systems choices behind useful, reliable LLM applications.

inferenceservingreliability

Systems Engineering

Database internals

An in-memory persistent embedded key-value database.

C++key-value storepersistence

Database internals

A relational database system with an emphasis on SQL and query optimization.

CSQLquery optimization